#include <Reader.hpp>

Inherits MeshReader, and Shared.

Classes
struct	Field

struct	RegionData

Public Member Functions
	Reader (const std::string &name)
	constructor More...

virtual std::string	get_format ()

virtual std::vector< std::string >	get_extensions ()

Public Member Functions inherited from MeshReader
	MeshReader (const std::string &name)

virtual	~MeshReader ()
	Virtual destructor. More...

void	read_mesh_into (const common::URI &path, Mesh &mesh)

virtual void	execute ()
	execute the action More...

void	signal_read (common::SignalArgs &node)

void	signature_read (common::SignalArgs &node)

Public Member Functions inherited from Action
	Action (const std::string &name)

virtual Action &	create_action (const std::string &action_provider, const std::string &name)

void	signal_execute (common::SignalArgs &node)
	signal to execute this action More...

Public Member Functions inherited from IAction
virtual	~IAction ()

Public Member Functions inherited from Component
	Component (const std::string &name)

virtual	~Component ()
	Virtual destructor. More...

const std::string &	name () const
	Access the name of the component. More...

void	rename (const std::string &name)
	Rename the component. More...

URI	uri () const
	Construct the full path. More...

void	complete_path (URI &path) const

Handle< Component >	access_component (const URI &path) const

Handle< Component >	access_component_checked (const URI &path)

Handle< Component const >	access_component_checked (const URI &path) const

Handle< Component >	handle ()
	Get a handle to the component. More...

Handle< Component const >	handle () const

template<typename ComponentT >
Handle< ComponentT >	handle ()

template<typename ComponentT >
Handle< ComponentT const >	handle () const

Handle< Component >	parent () const

Handle< Component const >	root () const

Handle< Component >	root ()

Handle< Component >	get_child (const std::string &name)

Handle< Component const >	get_child (const std::string &name) const

Handle< Component >	get_child_checked (const std::string &name)

Handle< Component const >	get_child_checked (const std::string &name) const

Handle< Component >	create_component (const std::string &name, const std::string &builder)
	Build a (sub)component of this component using the extended type_name of the component. More...

template<typename T >
Handle< T >	create_component (const std::string &name)
	Create a (sub)component of this component automatically cast to the specified type. More...

template<typename T >
Handle< T >	create_static_component (const std::string &name)
	Create a static "always there" subcomponent. More...

Component &	add_component (const boost::shared_ptr< Component > &subcomp)
	Add the passed component as a subcomponent. More...

void	add_link (Component &linked_component)

boost::shared_ptr< Component >	remove_component (const std::string &name)
	Remove a (sub)component of this component. More...

boost::shared_ptr< Component >	remove_component (Component &subcomp)
	Remove a (sub)component of this component. More...

void	clear ()
	Remove all sub-components of this component, except for the static ones. More...

void	move_to (Component &to_parent)

std::string	tree (bool basic_mode=false, Uint depth=0, Uint recursion_level=0) const

std::string	info (const std::string &what=std::string("cospt")) const

size_t	count_children () const

virtual std::string	derived_type_name () const =0

PropertyList &	properties ()

const PropertyList &	properties () const

OptionList &	options ()

const OptionList &	options () const

void	reset_options ()
	Reset all options to their default value. More...

void	configure_option_recursively (const std::string &optname, const boost::any &val)

Component &	mark_basic ()
	marks this component as basic. More...

template<typename ComponentT >
void	put_components (std::vector< boost::shared_ptr< ComponentT > > &vec, const bool recurse)

template<typename ComponentT >
void	put_components (std::vector< boost::shared_ptr< ComponentT const > > &vec, const bool recurse) const

template<>
void	put_components (std::vector< boost::shared_ptr< Component > > &vec, const bool recurse)

template<>
void	put_components (std::vector< boost::shared_ptr< Component const > > &vec, const bool recurse) const

Component::iterator	begin ()
	The begin iterator for a range containing Components. More...

Component::iterator	end ()
	The end iterator for a range containing Components. More...

Component::const_iterator	begin () const
	The begin iterator for a range containing Components (const version) More...

Component::const_iterator	end () const
	The end iterator for a range containing Components (const version) More...

Component::iterator	recursive_begin ()
	The begin iterator for a recursive range containing Components. More...

Component::iterator	recursive_end ()
	The end iterator for a recursive range containing Components. More...

Component::const_iterator	recursive_begin () const
	The begin iterator for a recursive range containing Components (const version) More...

Component::const_iterator	recursive_end () const
	The end iterator for a recursive range containing Components (const version) More...

template<typename T >
Handle< T >	create_component (const std::string &name, const std::string &builder)
	Create a component using the reduced builder name. More...

void	signal_configure (SignalArgs &args)
	configures all the options on this class More...

void	signal_create_component (SignalArgs &args)
	creates a component from this component More...

void	signal_delete_component (SignalArgs &args)
	delete this component More...

void	signal_move_component (SignalArgs &args)
	moves a component from this component to another More...

void	signal_list_tree (SignalArgs &args) const
	lists the sub components and puts them on the xml_tree More...

void	signal_list_tree_recursive (SignalArgs &args) const
	prints tree recursively More...

void	signal_list_properties (SignalArgs &args) const
	lists the properties of this component More...

void	signal_list_options (SignalArgs &args) const
	lists the properties of this component More...

void	signal_list_options_recursive (SignalArgs &args) const
	prints all options recursive More...

void	signal_list_signals (SignalArgs &args) const
	lists the signals of this component More...

void	signal_list_signals_recursive (SignalArgs &args) const
	prints all signals recursive More...

void	signal_print_info (SignalArgs &args) const
	gets info on this component More...

void	signal_print_tree (SignalArgs &args) const
	signal to print the tree More...

void	signature_print_tree (SignalArgs &args) const
	signature to signal_print_tree More...

void	signal_rename_component (SignalArgs &args)
	renames this component More...

void	signal_save_tree (SignalArgs &args)
	dumps the tree to a file More...

void	signal_list_content (SignalArgs &args)
	gives information about this component such as options, signals, ... More...

void	signal_signature (SignalArgs &args)
	Gives a signal signature, if any. More...

void	signature_create_component (SignalArgs &args)

void	signature_rename_component (SignalArgs &args)

void	signature_move_component (SignalArgs &args)

void	signal_store_timings (SignalArgs &args)
	Signal to store the timings (if enabled) into properties, i.e. for readout from python or the GUI. More...

void	signal_clear (SignalArgs &args)
	Signal to remove all sub-components. More...

void	signal_reset_options (SignalArgs &args)
	Signal to set all options to their default value. More...

void	signal_add_tag (SignalArgs &args)
	Signal to add a tag. More...

void	signature_add_tag (SignalArgs &args)

Public Member Functions inherited from SignalHandler
	~SignalHandler ()

const storage_t &	signal_list () const

SignalPtr	signal (const SignalID &sname)

SignalCPtr	signal (const SignalID &sname) const

SignalRet	call_signal (const SignalID &sname, SignalArgs &sinput)
	Calls the signal by providing its name and input. More...

SignalRet	call_signal (const SignalID &sname, std::vector< std::string > &sinput)
	Calls the signal by providing its name and input. More...

bool	signal_exists (const SignalID &sname) const
	Checks if a signal exists or not. More...

Signal &	regist_signal (const SignalID &sname)
	Regist signal. More...

void	unregist_signal (const SignalID &sname)
	Unregist signal. More...

Public Member Functions inherited from ConnectionManager
	~ConnectionManager ()
	destructor closes all connections More...

Connection *	connection (const std::string &name)

Connection *	manage_connection (const std::string &name)
	manages a connection (creates if necessary) More...

Public Member Functions inherited from TaggedObject
	TaggedObject ()
	Constructor. More...

bool	has_tag (const std::string &tag) const

void	add_tag (const std::string &tag)

std::vector< std::string >	get_tags () const

void	remove_tag (const std::string &tag)

Public Member Functions inherited from Shared
	Shared ()
	constructor More...

std::vector< std::string > &	get_supported_element_types ()

Static Public Member Functions
static std::string	type_name ()
	Gets the Class name. More...

Static Public Member Functions inherited from MeshReader
static std::string	type_name ()
	Get the class name. More...

Static Public Member Functions inherited from Action
static std::string	type_name ()
	Get the class name. More...

Static Public Member Functions inherited from Component
static std::string	type_name ()
	Get the class name. More...

Static Public Member Functions inherited from Shared
static std::string	type_name ()
	Gets the Class name. More...

static std::string	gmsh_name_to_cf_name (const Uint dim, const Uint gmsh_type)

Private Types
enum	HashType { NODES =0, ELEMS =1 }

Private Member Functions
void	get_file_positions ()

Handle< Region >	create_region (std::string const &relative_path)

void	find_used_nodes ()

void	read_coordinates ()

void	read_connectivity ()

void	read_element_node_data ()

void	read_element_data ()

void	read_node_data ()

virtual void	do_read_mesh_into (const common::URI &fp, Mesh &mesh)

void	fix_negative_volumes (Mesh &mesh)

void	read_variable_header (std::map< std::string, Field > &fields)

Private Attributes
Handle< MergedParallelDistribution >	m_hash

std::map< Uint, std::pair< Handle< Elements >, Uint > >	m_elem_idx_gmsh_to_cf

std::map< Uint, Uint >	m_node_idx_gmsh_to_cf

boost::filesystem::fstream	m_file

Handle< Mesh >	m_mesh

Handle< Region >	m_region

std::string	m_file_basename

Uint	m_nb_regions

Uint	m_mesh_dimension

std::vector< RegionData >	m_region_list

std::set< Uint >	m_ghost_nodes

std::set< Uint >	m_used_nodes

std::vector< std::set< Uint > >	m_node_to_glb_elements

std::streampos	m_region_names_position

std::streampos	m_coordinates_position

std::streampos	m_elements_position

std::vector< std::streampos >	m_element_data_positions

std::vector< std::streampos >	m_node_data_positions

std::vector< std::streampos >	m_element_node_data_positions

std::vector< std::vector< Uint > >	m_nb_gmsh_elem_in_region

Uint	m_total_nb_elements

Uint	m_total_nb_nodes

Uint	IO_rank

Additional Inherited Members
Public Types inherited from Component
typedef ComponentIterator< Component >	iterator
	type of the iterator to Component More...

typedef ComponentIterator< Component const >	const_iterator
	type of the iterator to constant Component More...

Public Types inherited from SignalHandler
typedef std::vector< SignalPtr >	storage_t
	storage type for signals More...

Public Attributes inherited from SignalHandler
storage_t	m_signals
	storage of the signals More...

Protected Types inherited from MeshReader
typedef std::map< std::string, boost::shared_ptr< common::ArrayBufferT< Uint > > >	BufferMap
	Map type from string to a common::Table<Uint>::Buffer. More...

Protected Types inherited from Shared
enum	gmshElement { P1LINE =1, P1TRIAG =2, P1QUAD =3, P1TETRA =4, P1HEXA =5, P1PRISM =6, P2LINE =8, P2TRIAG =9, P2QUAD =10, P2TETRA =11, P2HEXA =12, P0POINT =15, P3TRIAG =21, P3LINE =26, P3QUAD = 36 }

Protected Member Functions inherited from MeshReader
std::map< std::string, Handle< Elements > >	create_cells_in_region (Region &parent_region, Dictionary &nodes, const std::vector< std::string > &etypes)

std::map< std::string, Handle< Elements > >	create_faces_in_region (Region &parent_region, Dictionary &nodes, const std::vector< std::string > &etypes)

std::map< std::string, boost::shared_ptr< common::Table< Uint >::Buffer > >	create_connectivity_buffermap (std::map< std::string, Handle< Elements > > &elems_map)

void	remove_empty_element_regions (Region &parent_region)

Protected Member Functions inherited from Component
Component &	add_static_component (const boost::shared_ptr< Component > &subcomp)
	Add a static (sub)component of this component. More...

void	raise_tree_updated_event ()
	raise event that the path has changed More...

Protected Attributes inherited from MeshReader
Handle< Mesh >	m_mesh

common::URI	m_file_path

Protected Attributes inherited from Shared
std::map< GeoShape::Type, Uint >	m_CFelement_to_GmshElement

std::vector< std::string >	m_supported_types

std::vector< std::vector< Uint > >	m_nodes_cf_to_gmsh
	Faces are not defined in gmsh format. More...

std::vector< std::vector< Uint > >	m_nodes_gmsh_to_cf

Static Protected Attributes inherited from Shared
static const Uint	nb_gmsh_types = 37

static const Uint	m_nodes_in_gmsh_elem [nb_gmsh_types]

static const Uint	m_gmsh_elem_dim [nb_gmsh_types]

static const Uint	m_gmsh_elem_order [nb_gmsh_types]

static const std::string	gmsh_elem_geo_name [nb_gmsh_types]

static const std::string	dim_name [4] = { "0D", "1D", "2D", "3D" }

static const std::string	order_name [10] = { "P0", "P1", "P2", "P3", "P4", "P5", "P6", "P7", "P8", "P9" }

Detailed Description

This class defines gmsh mesh format reader

Author: Willem Deconinck; Martin Vymazal

Definition at line 39 of file Reader.hpp.

Member Enumeration Documentation

enum HashType

private

Enumerator
NODES
ELEMS

Definition at line 74 of file Reader.hpp.

Constructor & Destructor Documentation

Reader ( const std::string & name )

constructor

Definition at line 54 of file Reader.cpp.

Member Function Documentation

Handle< Region > create_region ( std::string const & relative_path )

private

Definition at line 267 of file Reader.cpp.

void do_read_mesh_into	(	const common::URI &	path,
		Mesh &	mesh
	)

privatevirtual

this function implements the concrete mesh reading algorithm and is called by read_mesh_into

Parameters

[in]	path	the file to read in
[in,out]	mesh	the mesh to write to

Implements MeshReader.

Definition at line 100 of file Reader.cpp.

void find_used_nodes ( )

private

Definition at line 286 of file Reader.cpp.

void fix_negative_volumes ( Mesh & mesh )

private

Note: this is now only implemented for LagrangeP2.Quad2D elements!!! others are ignored

Definition at line 1007 of file Reader.cpp.

std::vector< std::string > get_extensions ( )

virtual

Returns: the list of possible extensions of the file format

Implements MeshReader.

Definition at line 91 of file Reader.cpp.

void get_file_positions ( )

private

Definition at line 160 of file Reader.cpp.

virtual std::string get_format ( )

inlinevirtual

Returns: the name of the file format

Implements MeshReader.

Definition at line 48 of file Reader.hpp.

void read_connectivity ( )

private

Definition at line 501 of file Reader.cpp.

void read_coordinates ( )

private

Definition at line 398 of file Reader.cpp.

void read_element_data ( )

private

Definition at line 767 of file Reader.cpp.

void read_element_node_data ( )

private

Discontinuous fields section

$ElementNodeData
 number-of-string-tags
 < "string-tag" >
 ...
 number-of-real-tags
 < real-tag >
 ...
 number-of-integer-tags
 < integer-tag >
 ...
 elm-number number-of-nodes-per-element value ...
 ...
 $ElementEndNodeData

TODO: There are shapefunctions defined in this library that are otherwise not found from the buildername :-( We should find a solution for this to autoload automatically

Definition at line 656 of file Reader.cpp.

void read_node_data ( )

private

Definition at line 845 of file Reader.cpp.

void read_variable_header ( std::map< std::string, Field > & fields )

private

Definition at line 917 of file Reader.cpp.

static std::string type_name ( )

inlinestatic

Gets the Class name.

Definition at line 46 of file Reader.hpp.

Member Data Documentation

Uint IO_rank

private

Definition at line 166 of file Reader.hpp.

std::streampos m_coordinates_position

private

Definition at line 111 of file Reader.hpp.

std::map<Uint, std::pair<Handle<Elements>,Uint> > m_elem_idx_gmsh_to_cf

private

Definition at line 78 of file Reader.hpp.

std::vector<std::streampos> m_element_data_positions

private

Definition at line 113 of file Reader.hpp.

std::vector<std::streampos> m_element_node_data_positions

private

Definition at line 115 of file Reader.hpp.

std::streampos m_elements_position

private

Definition at line 112 of file Reader.hpp.

boost::filesystem::fstream m_file

private

Definition at line 81 of file Reader.hpp.

std::string m_file_basename

private

Definition at line 85 of file Reader.hpp.

std::set<Uint> m_ghost_nodes

private

Definition at line 103 of file Reader.hpp.

Handle<MergedParallelDistribution> m_hash

private

Definition at line 75 of file Reader.hpp.

Handle<Mesh> m_mesh

private

Definition at line 82 of file Reader.hpp.

Uint m_mesh_dimension

private

Definition at line 98 of file Reader.hpp.

std::vector<std::vector<Uint> > m_nb_gmsh_elem_in_region

private

Definition at line 118 of file Reader.hpp.

Uint m_nb_regions

private

Definition at line 96 of file Reader.hpp.

std::vector<std::streampos> m_node_data_positions

private

Definition at line 114 of file Reader.hpp.

std::map<Uint, Uint> m_node_idx_gmsh_to_cf

private

Definition at line 79 of file Reader.hpp.

std::vector<std::set<Uint> > m_node_to_glb_elements

private

Definition at line 107 of file Reader.hpp.

Handle<Region> m_region

private

Definition at line 83 of file Reader.hpp.

std::vector<RegionData> m_region_list

private

Definition at line 101 of file Reader.hpp.

std::streampos m_region_names_position

private

Definition at line 110 of file Reader.hpp.

Uint m_total_nb_elements

private

Definition at line 119 of file Reader.hpp.

Uint m_total_nb_nodes

private

Definition at line 120 of file Reader.hpp.

std::set<Uint> m_used_nodes

private

Definition at line 105 of file Reader.hpp.

The documentation for this class was generated from the following files:

cf3/mesh/gmsh/Reader.hpp
cf3/mesh/gmsh/Reader.cpp

Classes

Public Member Functions

Static Public Member Functions

Private Types

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation